Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791184.1_cds_XP_016505837.1_1836
CDS Infomation

[gene=LOC107823663] [db_xref=GeneID:107823663] [protein=probable protein phosphatase 2C 40] [protein_id=XP_016505837.1] [location=complement(join(70327..70454,70835..71099,71569..72702))] [gbkey=CDS]
Sequence

ATGATGTATGGGCAAACAATAGCTGACTCAGGAGGAGAAATCAAAATAAGTTTTGGCTAT
CACTGCACAGATGATTCAGGTGACGAATCAGACAGTATTCACAACTGCCATGGAATTAAA
CTTCAAAGAGCCAACAATTCCTTCTCTTGCTTGTCCGGTGCGGCTTTAAGTGCCAATGCC
ACACTAGCTAACACAAATATTTGCAATGGCTTGTTTGAAGCTGAGATACTTCCAGCCTTG
GATTCACCTACTTCTTTCCGCCGGATTCCCTCTTCACCGTCTTTCTCAAGATTGGATTTA
TTGTCATCTTCTTTCCAGAGCAATTTGTCAATCTTGAGTGGTAGTCCATCCTCTCCACGT
GAGCTACCTGGAGACGATTTATTTTCATTGAGGTCAATGAGTGCTCCTCCCAGAAGTGAA
GGTTTCCTTAATGCAACAGAAGTTAAAATTGCAGGCGGTGCAGCAGGTGAAGATAGAGTT
CAGGCTGTTTGTTCTGAAGAGAATGGGTCACTTTTCTGCGGCATATATGATGGCTTTAAT
GGAAGAGATGCAGCTGACTATCTGGCCGGTACATTATATGAAACAATTGGAAATCACCTC
AATTTATTGGATTGGGAAATAGGACAGGAGTCTGGTAAACTTTCTGACCGTTTGGGTTTA
TGTGGAAGCCTTCACGATGCCATTCAAGATGGCAAATCTAGCATTAATCAGGGATTATAT
GTTGATCGCTTTGCGGAAGTGGAAAAATCATGTGACTCATTTAAGCAGAAGGTACTTAAG
AGCCTCGAACAAGCTCTTTTTCAAGCTGAGAACGATTTCCTCCATATGGTTGAACAGGAA
ATGGATGACCGCCCGTACTTGGTATCCATTGGATGCTGTGTTTTAGCTGTGCTTCTCCTC
GGGAAAAACATGTATGTGCTCAACGTAGGTGATAGTCGAGCTGTATTGACAACACAATGT
AACGATGAAGTGTTGCAGGCTGTGCAGCTGACCGCTTGCCATAGTGTTGATGATGAATCC
GAAAGAACTCGACTACTAAAGGATCACCCTGATGATCCCAAAACTATCGTGGCTGGAAAA
GTCAAGGGAAAGCTAAAGGTTACTCGGGCACTTGGAGTAGGTTATTTGAAAAAGAAATCA
ATGAACGATGCTTTGATGGGAATTCTTCGAGTCCGTAATCTGATCAGTCCACCATATGTT
TCTGTGCAACCACATATGACTGTACACGAAATCTCAAGTTCAGATCAGTTTGTTGTGCTT
GGAAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGTTGTTAAACTTGTCCATTCT
TATATCCTACGTCACCCTTCTGGTGATCCAGCCAAATTTCTAGTGGAGCAGCTTGTGATG
CGAGCAGCAGATTGTGCAGGATTTAGTAGGGAAGAGTTGATGAGCATACCAGCTGGTAGG
AGAAGGAAATATCATGATGATATAACAGCCATTGTAATAATCCTTGGAATGAACAAACGC
ACCTCAAAAGCATCAACATGCATATGA

Peptide Sequence

PEP ID

XP_016505837.1
PEP Infomation

PREDICTED: probable protein phosphatase 2C 40 [Nicotiana tabacum]
Sequence

MMYGQTIADSGGEIKISFGYHCTDDSGDESDSIHNCHGIKLQRANNSFSCLSGAALSANA
TLANTNICNGLFEAEILPALDSPTSFRRIPSSPSFSRLDLLSSSFQSNLSILSGSPSSPR
ELPGDDLFSLRSMSAPPRSEGFLNATEVKIAGGAAGEDRVQAVCSEENGSLFCGIYDGFN
GRDAADYLAGTLYETIGNHLNLLDWEIGQESGKLSDRLGLCGSLHDAIQDGKSSINQGLY
VDRFAEVEKSCDSFKQKVLKSLEQALFQAENDFLHMVEQEMDDRPYLVSIGCCVLAVLLL
GKNMYVLNVGDSRAVLTTQCNDEVLQAVQLTACHSVDDESERTRLLKDHPDDPKTIVAGK
VKGKLKVTRALGVGYLKKKSMNDALMGILRVRNLISPPYVSVQPHMTVHEISSSDQFVVL
GSDGLFDFFSNDEVVKLVHSYILRHPSGDPAKFLVEQLVMRAADCAGFSREELMSIPAGR
RRKYHDDITAIVIILGMNKRTSKASTCI

Transcript Sequence

Gene sequence data has not been registered.